Publications by Hans w88 casino

Selected reviewed publications

A haplotype-phased genome of wheat stripe rust pathogen Puccinia striiformis f. sp. tritici, race PST-130 from the Western USA. w88 casino H, Kaur S, Epstein L, Dubcovsky J. PLoS One. 2020 Nov 11;15(11):e0238611. doi: 10.1371/journal.pone.0238611. eCollection 2020.

Uncovering hidden variation in polyploid wheat. Krasileva KV, w88 casino HA, Howell T, Bailey P, Paraiso F, Clissold L, Simmonds J, Ramirez-Gonzalez RH, Wang X, Borrill P, Fosker C, Ayling S, Phillips AL, Uauy C, Dubcovsky J. Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E913-E921. doi: 10.1073/pnas.1619268114. Epub 2017 Jan 17.

Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study. Mo Y, Howell T, w88 casino H, de Haro LA, Dubcovsky J, Pearce S. Mol Genet Genomics. 2018 Apr;293(2):463-477. doi: 10.1007/s00438-017-1401-6. Epub 2017 Nov 29.

Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia. Kippes N, Debernardi JM, w88 casino HA, Akpinar BA, Budak H, Kato K, Chao S, Akhunov E, Dubcovsky J. Proc Natl Acad Sci U S A. 2015 Sep 29;112(39):E5401-10. doi: 10.1073/pnas.1514883112. Epub 2015 Aug 31.

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing. Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, w88 casino H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L. Plant Cell. 2014 Apr;26(4):1382-1397. doi: 10.1105/tpc.113.121590. Epub 2014 Apr 11.

Unique features of the w88 casino (Pinus taeda L.) megagenome revealed through sequence annotation.
Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, w88 casino HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB. Genetics. 2014 Mar;196(3):891-909. doi: 10.1534/genetics.113.159996.

CartograTree: connecting tree genomes, phenotypes and environment. w88 casino HA, Yu JJ, Figueroa B, Gessler DD, Neale DB, Wegrzyn JL.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, w88 casino HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH. Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.

Conference presentations

w88 casino, H. et al. “Using Wheat BLAST Database to Search for mutations and expression”. PAG XXIV – Computer Demo. January 2016.

w88 casino, H. et al. “Using the Wheat TILLING Database”. PAG XXIII – Computer Demo. January 2015.

w88 casino, H. et al. “Use of CartograTree to Explore Forest Tree Genomes, Phenotypes, and Environment”. PAG XXI – Computer Demo. January 13-18, 2013.

Workshops

w88 casino, H. et al. “WheatCAP: Use of bioinformatics to help empower wheat researchers". UC Davis - December 2018.

w88 casino, H. et al. “Use of Exome Capture Technology to power TILLING in tetraploid pasta wheat (T. durum)”. PAG XXIII – January 2015.

w88 casino, H. et al. “Case Study: Enabling Forest Tree Genomics through Association Studies with the use of SSWAP”. PAG XXII – January 14, 2014.

w88 casino, H. et al. “Case Study: TreeGenes uses SSWAP to Serve Semantic Data to Existing Web Applications, New Web Applications, and Semantic Pipelines”. PAG XXI – January 13-18, 2013.